interface graph thumbnail
legend  pdf

structure nameFLPE W330F MUTANT-DNA HOLLIDAY JUNCTION COMPLEX
referenceRice et al. J.Biol.Chem. 278 24800 2003
sourceSACCHAROMYCES CEREVISIAE
experimentX-ray (resolution=2.70, R-factor=?)
structural superfamilyDNA breaking-rejoining enzymes;lambda integrase-like, N-terminal domain;
sequence familyRecombinase Flp protein; Recombinase Flp protein Nterminus;
redundant complexes1m6x
reference complex1flo_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureATMSYTKRKNRSNKS

Estimated binding specificities ?

contactlogo
# IC=11.287 IC/col=0.941 n_of_columns=12 specificity:   
A |   0  92  40  24  40   0   0  92  75   0   0   0
C |   0   3  20  24  20   0   0   0  21  96   0   0
G |  96   0  15  24  21  96  96   4   0   0   0   0
T |   0   1  21  24  15   0   0   0   0   0  96  96
scan!

Dendrogram of similar interfaces ?

matrix format
  
  --AATASAYGKG----KA----------RG----NAKA            +---------------------1p4e_A    
                                                    ! 
  ----------------KA----------STRGYT----   L   +----3           +----------1z19_A    
                                               !    !         +-1 
  WT----------------RTHTNCTC--QGKG------   L   !    +---------2 +----------2a3v_B    
                                             --4              ! 
  --------------KA------STRG--EA--------   L   !              +-----------1xo0_B    
                                               ! 
  ------------QA--KT--------ETRG----YG--   L   +--------------------------2h7g_X

home
updated Mon Dec 18 05:47:15 2023