interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE T. VAGINALIS IBP39 INITIATOR BINDING DOMAIN (IBD) BOUND TO THE ALPHA-SCS INR ELEMENT
(39 kDa initiator binding protein)
referenceSchumacher et al. 'Cell(Cambridge,Mass.)' 115 413 2003
sourceTrichomonas vaginalis
experimentX-ray (resolution=3.05, R-factor=0.269)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyTranscriptioninitiator DNAbinding domain I;
multimeric complexes1pp8_FMU
reference complex1pp7_U
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKSRNTV

Estimated binding specificities ?

contactlogo
# IC=7.216 IC/col=0.722 n_of_columns=10 specificity:   
A |   4   4   0  96  24  24   4  16  96  12
C |   4   4  96   0  24  24   4  52   0  62
G |  83   4   0   0  24  24   1  16   0   4
T |   5  84   0   0  24  24  87  12   0  18
scan!

home
updated Sun Jun 28 04:27:57 2026