interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE T. VAGINALIS IBP39 INITIATOR BINDING DOMAIN (IBD) BOUND TO THE ALPHA-SCS INR ELEMENT
(39 kDa initiator binding protein)
referenceSchumacher et al. 'Cell(Cambridge,Mass.)' 115 413 2003
sourceTrichomonas vaginalis
experimentX-ray (resolution=3.05, R-factor=0.269)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyTranscriptioninitiator DNAbinding domain I;
multimeric complexes1pp8_FMU
reference complex1pp7_U
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKSRNTV

Estimated binding specificities ?

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# IC=7.552 IC/col=0.755 n_of_columns=10 specificity:   
A |   0   0   0  96  24  24   6  24  96   0
C |   0   6  96   0  24  24   6  48   0  60
G |  90   0   0   0  24  24   6   6   0  18
T |   6  90   0   0  24  24  78  18   0  18
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updated Thu Sep 12 15:18:46 2024