interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE T. VAGINALIS IBP39 INITIATOR BINDING DOMAIN (IBD) BOUND TO THE ALPHA-SCS INR ELEMENT
(39 kDa initiator binding protein)
referenceSchumacher et al. 'Cell(Cambridge,Mass.)' 115 413 2003
sourceTrichomonas vaginalis
experimentX-ray (resolution=3.05, R-factor=0.269)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyTranscriptioninitiator DNAbinding domain I;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKSRNTV

Estimated binding specificities ?

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# IC=7.445 IC/col=0.744 n_of_columns=10 specificity:   
A |   6   6   0  96  24  24   6   6  96  12
C |   6   6  96   0  24  24   6  66   0  78
G |  84   6   0   0  24  24   6  12   0   0
T |   0  78   0   0  24  24  78  12   0   6
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updated Mon Dec 16 18:35:56 2024