1qn3_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE C(-25) ADENOVIRUS MAJOR LATE PROMOTER TATA BOX VARIANT BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP ISOFORM 2). TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING PROTEIN HAS BEEN CONSERVED THROUGHOUT EVOLUTION. (TRANSCRIPTION INITIATION FACTOR TFIID-1)
reference	Patikoglou et al. 'Genes 13 3217 1999
source	ARABIDOPSIS THALIANA
experiment	X-ray (resolution=1.95, R-factor=0.199)
structural superfamily	TATA-box binding protein-like;
sequence family	Transcription factor TFIID or TATAbinding;
multimeric complexes	1vol_AB
reference complex	1qna_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1qn3_A interface=12,14,42,57,59,65,67,102,104,133,134,148,150,156,158, khpsgivptlqNiVstvnldckldlkaialqarnaeynpkrFaavimrirepkttaLiFasgkmVcTgaksedfskmaarkyarivqklgfpakfkdfkiqNiVgscdvkfpirleglayshaafssyepelFPgliyrmkvpkivlLiFvsgkiViTgakmrdetykafeniypvlsefrki
interface signature	NVFLFVTNVFPLFVT

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# IC=8.004 IC/col=1.001 n_of_columns=8

A |   9   0   9   0   0  67   0  96
C |  67   0   9   0   0  11   0   0
G |   9  96   9   0   0   9   0   0
T |  11   0  69  96  96   9  96   0

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updated Thu Sep 12 15:21:37 2024