interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE T(-27) ADENOVIRUS MAJOR LATE PROMOTER TATA BOX VARIANT BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP ISOFORM 2). TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING PROTEIN HAS BEEN CONSERVED THROUGHOUT EVOLUTION.
(TRANSCRIPTION INITIATION FACTOR TFIID-1)
referencePatikoglou et al. 'Genes 13 3217 1999
sourceARABIDOPSIS THALIANA
experimentX-ray (resolution=2.30, R-factor=0.194)
structural superfamilyTATA-box binding protein-like;
sequence familyTranscription factor TFIID or TATAbinding;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureNVFLFVTNVFPLFVT

Estimated binding specificities ?

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# IC=8.386 IC/col=1.048 n_of_columns=8 specificity:   
A |  13   0  15  96   0  82   0  96
C |  57   0   0   0   0   1   0   0
G |  13   0  13   0   0  13   0   0
T |  13  96  68   0  96   0  96   0
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updated Mon Dec 16 18:40:13 2024