1qn9_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE C(-29) ADENOVIRUS MAJOR LATE PROMOTER TATA BOX VARIANT BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP ISOFORM 2). TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING PROTEIN HAS BEEN CONSERVED THROUGHOUT EVOLUTION. (TRANSCRIPTION INITIATION FACTOR TFIID-1)
reference	Patikoglou et al. 'Genes 13 3217 1999
source	ARABIDOPSIS THALIANA
experiment	X-ray (resolution=1.90, R-factor=0.209)
structural superfamily	TATA-box binding protein-like;
sequence family	Transcription factor TFIID or TATAbinding;
multimeric complexes	1vol_AB
reference complex	1qna_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1qn9_B interface=16,18,46,61,63,69,71,106,108,137,138,152,154,160,162, vdlskhpsgivptlqNiVstvnldckldlkaialqarnaeynpkrFaavimrirepkttaLiFasgkmVcTgaksedfskmaarkyarivqklgfpakfkdfkiqNiVgscdvkfpirleglayshaafssyepelFPgliyrmkvpkivlLiFvsgkiViTgakmrdetykafeniypvlsefrk
interface signature	NVFLFVTNVFPLFVT

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# IC=7.858 IC/col=0.982 n_of_columns=8

A |   8  96   0  96  96  56  96   8
C |   8   0  96   0   0  16   0  16
G |   8   0   0   0   0  16   0  64
T |  72   0   0   0   0   8   0   8

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updated Sat Aug 2 01:43:21 2025