interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE T(-25) ADENOVIRUS MAJOR LATE PROMOTER TATA BOX VARIANT BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP ISOFORM 2). TATA ELEMENT RECOGNITION BY THE TATA BOX-BINDING PROTEIN HAS BEEN CONSERVED THROUGHOUT EVOLUTION.
(TRANSCRIPTION INITIATION FACTOR TFIID-1)
referencePatikoglou et al. 'Genes 13 3217 1999
sourceARABIDOPSIS THALIANA
experimentX-ray (resolution=2.23, R-factor=0.191)
structural superfamilyTATA-box binding protein-like;
sequence familyTranscription factor TFIID or TATAbinding;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureNVFLFVTNVFPLFVT

Estimated binding specificities ?

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# IC=8.334 IC/col=1.042 n_of_columns=8 specificity:   
A |  12  96  12   0   0  96   0  96
C |  48   0  12   0   0   0   0   0
G |  24   0  24   0   0   0   0   0
T |  12   0  48  96  96   0  96   0
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updated Mon Dec 16 18:40:40 2024