interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE ADENOVIRUS MAJOR LATE PROMOTER TATA BOX BOUND TO WILD-TYPE TBP (ARABIDOPSIS THALIANA TBP ISOFORM 2).
(TRANSCRIPTION INITIATION FACTOR TFIID-1)
referenceBurley et al. 'Genes 13 3217 1999
sourceARABIDOPSIS THALIANA
experimentX-ray (resolution=1.90, R-factor=0.197)
structural superfamilyTATA-box binding protein-like;
sequence familyTranscription factor TFIID or TATAbinding;
multimeric complexes1vol_AB
reference complex1qna_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureNVFLFVTNVFPLFVT

Estimated binding specificities ?

readout + contactlogo
# IC=8.431 IC/col=1.054 n_of_columns=8 specificity:   
A |   0  96   0  96  96  54  96  16
C |   0   0   0   0   0  16   0  13
G |   0   0   0   0   0  13   0  54
T |  96   0  96   0   0  13   0  13
scan!

home
updated Thu Sep 12 15:22:32 2024