1r4i_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF ANDROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO A DIRECT REPEAT RESPONSE ELEMENT
reference	Shaffer et al. Proc.Natl.Acad.Sci.USA 101 4758 2004
source	Rattus norvegicus
experiment	X-ray (resolution=3.10, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	1r4i_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1r4i_A interface=26,27,31, pqktclicgdeasgahygaltcgscKVffkRaaegkqkylcasrndctidkfrrkncpscrlrkcyeagmtlga > 1r4i_B interface=14,24,25,28,29, ktclicgdeasgaHygaltcgscKVffKRaaegkqkylcasrndctidkfrrkncpscrlrkcyeagmtlg
interface signature	KVR/HKVKR

Estimated binding specificities ?

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# IC=7.706 IC/col=0.642 n_of_columns=12

specificity:

A |  19   0  24  87   0  19  24  24  24   0   0   0
C |  17   0  24   0  96   8  24  24  24   0   0   0
G |  17  88  24   1   0  17  24  24  24   0  96   0
T |  43   8  24   8   0  52  24  24  24  96   0  96

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updated Mon Sep 9 14:00:43 2024