interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF HUMAN ANDROGEN RECEPTOR DNA BINDING DOMAIN BOUND TO ITS RESPONSE ELEMENT: C3(1)ARE
referenceVan Eynde et al. 'J.Steroid 241 106499 2024
experimentX-ray (resolution=2.05, R-factor=0.223)
structural superfamilyGlucocorticoid receptor-like DNA-binding domain;
sequence familyZinc finger, C4 type two domains;
multimeric complexes1r4i_AB 8rm6_AB 8rm7_AB
redundant complexes1r4i_B 8rm7_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKVR

Estimated binding specificities ?

contactlogo
# IC=4.007 IC/col=0.668 n_of_columns=6 specificity:   
A |  69   9  24  67   0  96
C |   9   9  24  11  96   0
G |   9  67  24   9   0   0
T |   9  11  24   9   0   0
scan!

Dendrogram of similar interfaces ?

matrix format
  
  --EAKG--KTRG--   L                                   +4umm_A    
                                   +-------------------1 
  ----KGVG--RG--   L               !                   +4tnt_B    
                         +---------5 
  CAECKG--KGRG--   L     !         !     +-------------1cit_A    
                         !         +-----4 
  --ECKGAGKGRG--   L     !               !            +1hcq_E    
                       +-6               +------------3 
  ----KGVT--RG--   L   ! !                            ! +5emc_A    
                       ! !                            +-2 
  --ECKGAG--KTRG   L --7 !                              +4aa6_B    
                       ! ! 
  ----KGVT--RG--   L   ! +-----------------------------2c7a_B    
                       ! 
  --ECKGAG--RG--   L   +-----------------------------4ond_A    
                     

home
updated Tue Jun 30 18:04:34 2026