1r4r_AB : 3D-footprint complex

structure name	CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE GLUCOCORTICOID RECEPTOR WITH DNA
reference	Otwinowski et al. Nature 352 497 1991
source	Rattus norvegicus
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	3g9m_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1r4r_A interface=24,25,28,29, rpclvcsdeasgchygvltcgscKVffKRavegqhnylcagrndciidkirrkncpacryrkclqagmnlear > 1r4r_B interface=18,28,29,33, mkparpclvcsdeasgcHygvltcgscKVffkRavegqhnylcagrndciidkirrkncpacryrkclqagmnlear
interface signature	KVKR/HKVR

Estimated binding specificities ?

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# IC=6.383 IC/col=0.580 n_of_columns=11

specificity:

A |   7  24  96   7  96  24  24  24   7   0   7
C |   7  24   0  75   0  24  24  24   7   0   7
G |  73  24   0   7   0  24  24  24   7  96   7
T |   9  24   0   7   0  24  24  24  75   0  75

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updated Fri Dec 13 11:00:24 2024