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structure nameGR DNA-BINDING DOMAIN:SGK 16BP COMPLEX-44
(Glucocorticoid receptor)
referenceYamamoto et al. Science 324 407 2009
sourceRattus norvegicus
experimentX-ray (resolution=1.61, R-factor=0.188)
structural superfamilyGlucocorticoid receptor-like DNA-binding domain;
sequence familyZinc finger, C4 type two domains;
multimeric complexes1glu_AB 1r4o_AB 1r4r_AB 3fyl_AB 3g6p_AB 3g6q_AB 3g6r_AB 3g6u_AB 3g8u_AB 3g8x_AB 3g97_AB 3g99_AB 3g9i_AB 3g9j_AB 3g9m_AB 3g9o_AB 3g9p_AB 5va0_AB 5va7_AB 6bse_AB 6x6d_AB 6x6e_AB
redundant complexes1glu_A 1r4o_B 1r4r_B 3fyl_B 3g6p_A 3g6q_A 3g6r_A 3g6u_B 3g8u_A 3g8x_A 3g97_A 3g99_B 3g9i_A 3g9j_A 3g9o_B 3g9p_B 5va0_B 5va7_B 6bqu_A 6bse_A 6bsf_A 6x6d_B 6x6e_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence

No structural evidence for specific binding to DNA (<4 informative columns)


Dendrogram of similar interfaces ?

matrix format
  
  --EAKG--RTRTRT--                              +4umm_E    
                                      +---------1 
  --EAKG--RTRTRT--                    !         +2han_B    
                               +------8 
  --DGKG--RTRG----   L         !      !         +3cbb_A    
                               !      +---------2 
  --ECKG--KGRG----             !                +3dzy_A    
                            +-11  
  --EAKG--RTRG----   L      !  !            +---1kb2_B    
                            !  !    +-------6 
  --ETKGAT--RG----   L      !  !    !       !   +1lat_A    
                            !  !    !       +---3 
  --EAKG--KTRG----   L      !  +----9           +2han_A    
                            !       ! 
  CAECKG--KGRG----   L      !       !       +---6l6q_B    
                         +-12       +-------7 
  ----KAVA--RA----   L   !  !               !   +5e69_A    
                         !  !               +---4 
  --ECKG--KGRG----   L   !  !                   +2ff0_A    
                         !  !  
  --ECKGAG--RG----   L -13  !                 +4ond_A    
                         !  !  +--------------5 
  --ECKG--RGRG--RT   L   !  +-10              +3dzy_D    
                         !     !  
  --ECKGAGKGRG----   L   !     +---------------1hcq_E    
                         !  
  ----KGVT--RG----       +---------------------5emp_A

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updated Tue Dec 17 23:22:14 2024