1r71_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF KORB IN COMPLEX WITH THE OPERATOR DNA
reference	Heinemann et al. Nat.Struct.Mol.Biol. 11 656 2004
source	Escherichia coli
experiment	X-ray (resolution=2.20, R-factor=?)
structural superfamily	KorB DNA-binding domain-like;
reference complex	1r71_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1r71_C interface=42,43,44,45,47,48,70,72,76,101, adqvienlqrneltpreiadfigrelakgkkkgdiakeigkSPAFiTQhvtlldlpekiadafntgrvrDvTvvnElvtafkkrpeeveawldddtqeitRgtvkllrefld > 1r71_D interface=44,45,46,49,50,72,74,78,103, neadqvienlqrneltpreiadfigrelakgkkkgdiakeigkSPAfiTQhvtlldlpekiadafntgrvrDvTvvnElvtafkkrpeeveawldddtqeitRgtvkllreflde
interface signature	SPAFTQDTER/SPATQDTER

Estimated binding specificities ?

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# IC=10.563 IC/col=1.056 n_of_columns=10

specificity:

A |   0  16   8  96  24   0   0   0   0   0
C |   0  16  16   0   0  96   0   0  96   0
G |   0   8  24   0  72   0  96  96   0   0
T |  96  56  48   0   0   0   0   0   0  96

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updated Wed Jun 24 11:24:37 2026