structure name | CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF KORB IN COMPLEX WITH THE OPERATOR DNA (Transcriptional repressor protein korB) |
reference | Heinemann et al. Nat.Struct.Mol.Biol. 11 656 2004 |
source | Escherichia coli |
experiment | X-ray (resolution=2.20, R-factor=0.198) |
structural superfamily | KorB DNA-binding domain-like; |
sequence family | KorB domain; |
multimeric complexes | 1r71_AB 1r71_CD |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | SPAFTQDTER |
Estimated binding specificities ?
readout + contact |
A | 0 19 63 0 0 0 24 24 17 C | 0 8 17 0 96 96 24 24 17 G | 0 8 8 96 0 0 24 24 10 T | 96 61 8 0 0 0 24 24 52scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: KORB | ||
TTTAGC | PubMed | 1r71_B(4.61e-05), 1r71_AB(8.94e-08), 1r71_CD(1.20e-07) |
GCTAAA | PubMed | 1r71_B(4.61e-05), 1r71_AB(8.94e-08), 1r71_CD(1.20e-07) |
Dendrogram of similar interfaces ?
matrix format--STPTATFTTTQT--DGTC------RG---- L +-1r71_B +---1 ----QASATAATNTRT----RG--RG------ L +--------2 +-6y93_B ! ! STSTRGKGIG--RG----RG------------ L --3 +-----3mkw_B ! ETSGRGAT--ATNTRT------KC--VTRTEC L +--------------4umk_D |
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updated Tue Dec 19 06:04:20 2023