1r8d_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF MTAN BOUND TO DNA
reference	Newberry et al.
source	Bacillus subtilis
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	Putative DNA-binding domain;
reference complex	1r8d_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1r8d_A interface=17,20,21,38, mkyqvkqvaeisgvsiRtlHHydniellnpsaltdagYrlysdadlerlqqilffkeigfrldeikemldhpnfdrkaalqsqkeilmkkkqrmdemiqtidrtllsvd > 1r8d_B interface=17,20,21,38, mkyqvkqvaeisgvsiRtlHHydniellnpsaltdagYrlysdadlerlqqilffkeigfrldeikemldhpnfdrkaalqsqkeilmkkkqrmdemiqtidrtlls
interface signature	RHHY/RHHY

Estimated binding specificities ?

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# IC=10.584 IC/col=0.557 n_of_columns=19

specificity:

A |   8  24  24  24  24  96   0   0   8  24   8   0   0   0  24  56  24  24   4
C |  72  24  24  24  24   0  96   0   8  24   8  96   0   0  24  14  24  24   4
G |   8  24  24  24  24   0   0  96  11  24  69   0  96   0  24  13  24  24  84
T |   8  24  24  24  24   0   0   0  69  24  11   0   0  96  24  13  24  24   4

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updated Mon Sep 9 14:01:38 2024