1r8d_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF MTAN BOUND TO DNA
reference	Newberry et al.
source	Bacillus subtilis
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	Putative DNA-binding domain;
reference complex	1r8d_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1r8d_A interface=17,20,21,38, mkyqvkqvaeisgvsiRtlHHydniellnpsaltdagYrlysdadlerlqqilffkeigfrldeikemldhpnfdrkaalqsqkeilmkkkqrmdemiqtidrtllsvd > 1r8d_B interface=17,20,21,38, mkyqvkqvaeisgvsiRtlHHydniellnpsaltdagYrlysdadlerlqqilffkeigfrldeikemldhpnfdrkaalqsqkeilmkkkqrmdemiqtidrtlls
interface signature	RHHY/RHHY

Estimated binding specificities ?

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# IC=10.534 IC/col=0.554 n_of_columns=19

specificity:

A |   9  24  24  24  24  96   0   0   9  24   9   0   0   0  24  57  24  24   4
C |  68  24  24  24  24   0  96   0  10  24  10  96   0   0  24  13  24  24   2
G |  10  24  24  24  24   0   0  96   9  24  68   0  96   0  24  13  24  24  86
T |   9  24  24  24  24   0   0   0  68  24   9   0   0  96  24  13  24  24   4

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updated Tue Jul 29 16:35:51 2025