1r8d_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF MTAN BOUND TO DNA
reference	Newberry et al.
source	Bacillus subtilis
experiment	X-ray (resolution=2.70, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1r8d_A interface=17,20,21,38, mkyqvkqvaeisgvsiRtlHHydniellnpsaltdagYrlysdadlerlqqilffkeigfrldeikemldhpnfdrkaalqsqkeilmkkkqrmdemiqtidrtllsvd > 1r8d_B interface=17,20,21,38, mkyqvkqvaeisgvsiRtlHHydniellnpsaltdagYrlysdadlerlqqilffkeigfrldeikemldhpnfdrkaalqsqkeilmkkkqrmdemiqtidrtlls
interface signature	RHHY/RHHY

Estimated binding specificities ?

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# IC=10.269 IC/col=0.540 n_of_columns=19

specificity:

A |   8  24  24  16  24  96   0   0   0  24  24   0   0   0  24  24  24  24  16
C |  72  24  24  16  24   0  96   0  96  24  24  96   0   0  24  24  24  24  16
G |   8  24  24   8  24   0   0  96   0  24  24   0  96   0  24  24  24  24  48
T |   8  24  24  56  24   0   0   0   0  24  24   0   0  96  24  24  24  24  16

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updated Fri Dec 13 11:00:59 2024