1r8d_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF MTAN BOUND TO DNA (transcription activator MtaN)
reference	Newberry et al.
source	Bacillus subtilis
experiment	X-ray (resolution=2.70, R-factor=0.234)
structural superfamily	Putative DNA-binding domain;
sequence family	MerR family regulatory protein; MerR, DNA binding;
multimeric complexes	1r8d_AB
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1r8d_B interface=17,20,21,38, mkyqvkqvaeisgvsiRtlHHydniellnpsaltdagYrlysdadlerlqqilffkeigfrldeikemldhpnfdrkaalqsqkeilmkkkqrmdemiqtidrtlls
interface signature	RHHY

Estimated binding specificities ?

contact

# IC=5.766 IC/col=0.641 n_of_columns=9

specificity:

A |  13  24  24  13  24  96   0   0   0
C |  54  24  24  13  24   0  96   0  96
G |  13  24  24  16  24   0   0  96   0
T |  16  24  24  54  24   0   0   0   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RGHTHCYG   L      +----------1r8d_B    
                 +--2 
  KGRTFCYG   L   !  +----------4wls_B    
               --3 
  KGRT----   L   !           +-5i44_I    
                 +-----------1 
  RCRT----                   +-7tec_A

home
updated Fri Sep 13 15:58:14 2024