1r8d_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF MTAN BOUND TO DNA (transcription activator MtaN)
reference	Newberry et al.
source	Bacillus subtilis
experiment	X-ray (resolution=2.70, R-factor=0.234)
structural superfamily	Putative DNA-binding domain;
sequence family	MerR family regulatory protein; MerR, DNA binding;
multimeric complexes	1r8d_AB
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1r8d_B interface=17,20,21,38, mkyqvkqvaeisgvsiRtlHHydniellnpsaltdagYrlysdadlerlqqilffkeigfrldeikemldhpnfdrkaalqsqkeilmkkkqrmdemiqtidrtlls
interface signature	RHHY

Estimated binding specificities ?

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# IC=5.032 IC/col=0.559 n_of_columns=9

specificity:

A |  19   0   0   0  24  54  24  24   8
C |  17  96   0   0  24   8  24  24   8
G |  43   0  96   0  24  17  24  24  78
T |  17   0   0  96  24  17  24  24   2

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RGHTHCYG   L      +----------1r8d_B    
                 +--2 
  KGRTFCYG   L   !  +----------4wls_B    
               --3 
  KGRT----   L   !           +-5i44_I    
                 +-----------1 
  RCRT----                   +-7tec_A

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updated Sat Jan 10 04:55:14 2026