interface graph thumbnail
legend  pdf

structure nameA NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMER
referenceChen et al. Nat.Struct.Biol. 5 67 1998
sourceMus musculus
experimentX-ray (resolution=2.70, R-factor=?)
structural superfamilyp53-like transcription factors;E set domains;
reference complex9bdw_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRRYCERK/YCER

Estimated binding specificities ?

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# IC=6.515 IC/col=0.814 n_of_columns=8 specificity:   
A |   9   0   0  96  96  24   9  19
C |   9   0   0   0   0  24   9   9
G |  11  96  96   0   0  24  11   9
T |  67   0   0   0   0  24  67  59
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updated Sun Jan 4 23:25:18 2026