interface graph thumbnail
legend  pdf

structure nameA NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMER
referenceChen et al. Nat.Struct.Biol. 5 67 1998
sourceMus musculus
experimentX-ray (resolution=2.70, R-factor=?)
structural superfamilyp53-like transcription factors;E set domains;
reference complex9bdw_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRRYCERK/YCER

Estimated binding specificities ?

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# IC=6.690 IC/col=0.836 n_of_columns=8 specificity:   
A |   0   0   0  96  96  24   9  21
C |   9   0   0   0   0  24  19   9
G |   9  96  96   0   0  24   9   9
T |  78   0   0   0   0  24  59  57
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updated Wed Jun 24 11:27:39 2026