1srs_AB : 3D-footprint complex

structure name	SERUM RESPONSE FACTOR (SRF) CORE COMPLEXED WITH SPECIFIC SRE DNA
reference	Pellegrini et al. Nature 376 490 1995
source	Homo sapiens
experiment	X-ray (resolution=3.20, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1srs_A interface=1,4,24, TrgRvkikmefidnklrryttfsKrktgimkkayelstltgtqvlllvasetghvytfatrklqpmitsetgkaliqtclnspd > 1srs_B interface=1,4,20,23,24, TrgRvkikmefidnklrryTtfSKrktgimkkayelstltgtqvlllvasetghvytfatrklqpmitsetgkaliqtcl
interface signature	TRK/TRTSK

Estimated binding specificities ?

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# IC=9.121 IC/col=0.912 n_of_columns=10

specificity:

A |  64   3   0  96  52  13   4  93   0   0
C |  26  89   0   0   8   9   3   3   0   0
G |   3   0  16   0  23  15   3   0  96  96
T |   3   4  80   0  13  59  86   0   0   0

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updated Fri Dec 13 11:13:56 2024