1tc3_C : 3D-footprint complex

structure name	TRANSPOSASE TC3A1-65 FROM CAENORHABDITIS ELEGANS (PROTEIN TC3 TRANSPOSASE)
reference	Van Pouderoyen et al. 'EMBO 16 6044 1997
source	Caenorhabditis elegans
experiment	X-ray (resolution=2.45, R-factor=0.234)
structural superfamily	Homeodomain-like;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1tc3_C interface=1,2,25,34,35,36,39, PRgsalsdteraqldvmkllnvslHemsrkisrSRHciRvylkdpvsygts
interface signature	PRHSRHR

Estimated binding specificities ?

readout + contact

# IC=8.471 IC/col=1.059 n_of_columns=8

specificity:

A |  60   0  96   0   0  12   0   0
C |  12   0   0   0   0  48  96  96
G |  12   0   0  96  96  12   0   0
T |  12  96   0   0   0  24   0   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RT----HGSGRGHG--RT------   L   +----------------------1u78_A    
                                 ! 
  RT----HGSGRGHG--RT------   L --3                     +1tc3_C    
                                 !      +--------------1 
  --RTQG----PTSGTCSTTC----   L   +------2              +1hlv_A    
                                        ! 
  --KA--------VT--KGDCRGTA   L          +---------------1w0u_A

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updated Tue Dec 17 22:24:08 2024