| structure name | STRUCTURE OF THE BIPARTITE DNA-BINDING DOMAIN OF TC3 TRANSPOSASE BOUND TO TRANSPOSON DNA (transposable element tc3 transposase) |
| reference | van Pouderoyen et al. 'Nucleic 32 4306 2004 |
| source | Caenorhabditis elegans |
| experiment | X-ray (resolution=2.69, R-factor=0.235) |
| structural superfamily | Homeodomain-like; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | PRHSRHRRRSKRTLN |
Estimated binding specificities ?
| readout + contact |  |
A | 9 4 0 74 77 24 10 1 24 24 0 96 3 96 0 0 77 0 0 3 C | 3 3 0 9 6 24 0 3 24 24 3 0 3 0 0 0 7 96 96 89 G | 80 86 96 7 6 24 83 0 24 24 1 0 4 0 96 96 6 0 0 3 T | 4 3 0 6 7 24 3 92 24 24 92 0 86 0 0 0 6 0 0 1scan! |
Dendrogram of similar interfaces ?
matrix format--------KG----ECRG--HC--KTPT----STQAQGAT--SA---- L +-----------------------------4u7b_B +-1 NG--SCHG------SGKT------SA------SG--SGSG--NART-- L +-2 +-----------------------------1k78_A ! ! ----STNT--CT--ST--------------RGSGVTSCSG--NTRTRT L +-3 +-----------------------------6pax_A ! ! --------TG--RTDC--YT------------SGRAAA----FT---- L +-4 +-----------------------------4fcy_B ! ! RTHGSGRGHG----RT-------------------------------- L +-5 +-----------------------------1tc3_C ! ! --------------IT----IT----RTPA--AGLASTTGLT--KA-- L --6 +-----------------------------4m6f_A ! ----------------IT----FT--RA----ACRGSGTC--YTKT-- L +-----------------------------1gdt_A |
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updated Tue Dec 17 22:27:30 2024