1u0d_AB : 3D-footprint complex

structure name	Y33H MUTANT OF HOMING ENDONUCLEASE I-CREI
reference	Stoddard et al. J.Mol.Biol. 342 31 2004
source	Chlamydomonas reinhardtii
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	1t9i_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1u0d_A interface=21,23,25,27,29,31,32,37,43,45,65,67,69,72,138,139, ntkynkefllylagfvdgdgSiIaQiKpNqSHkfkhQlsltfQvTektqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld > 1u0d_B interface=23,25,27,29,31,32,37,43,45,65,67,69,72,139, ntkynkefllylagfvdgdgsiIaQiKpNqSHkfkhQlsltfQvTektqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndskTrkttsetvravld
interface signature	SIQKNSHQQTYRRVKT/IQKNSHQQTYRRVT

Estimated binding specificities ?

readout + contact

# IC=19.744 IC/col=0.940 n_of_columns=21

specificity:

A |   0   0  90  24   3   0   0   0   7  24   7  76   0  84   0  80   0  24   0  15   0
C |  96   0   0  24  84   0   0  96   0  24  10   6   0   7  96   0   0  24   0  69  96
G |   0  96   3  24   6  96   0   0  86  24   3   7  96   2   0   1  96  24   0   7   0
T |   0   0   3  24   3   0  96   0   3  24  76   7   0   3   0  15   0  24  96   5   0

scan!

home
updated Sun Jan 4 23:43:50 2026