1u0d_AB : 3D-footprint complex

structure name	Y33H MUTANT OF HOMING ENDONUCLEASE I-CREI
reference	Stoddard et al. J.Mol.Biol. 342 31 2004
source	Chlamydomonas reinhardtii
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	1t9i_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1u0d_A interface=21,23,25,27,29,31,32,37,43,45,65,67,69,72,138,139, ntkynkefllylagfvdgdgSiIaQiKpNqSHkfkhQlsltfQvTektqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld > 1u0d_B interface=23,25,27,29,31,32,37,43,45,65,67,69,72,139, ntkynkefllylagfvdgdgsiIaQiKpNqSHkfkhQlsltfQvTektqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndskTrkttsetvravld
interface signature	SIQKNSHQQTYRRVKT/IQKNSHQQTYRRVT

Estimated binding specificities ?

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# IC=21.273 IC/col=1.013 n_of_columns=21

specificity:

A |   0   6  96  82   0   7   0   4   0   6  84  24   5   0  96   0   3  24   0   0   0
C |   0   3   0   6  96   0   0   0  96   3   6  24  79   0   0  96   4  24   0  96   0
G |  96  64   0   5   0   0  96   3   0   8   3  24   6  96   0   0   3  24   0   0  96
T |   0  23   0   3   0  89   0  89   0  79   3  24   6   0   0   0  86  24  96   0   0

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updated Fri Dec 13 11:19:32 2024