1u0d_AB : 3D-footprint complex

structure name	Y33H MUTANT OF HOMING ENDONUCLEASE I-CREI
reference	Stoddard et al. J.Mol.Biol. 342 31 2004
source	Chlamydomonas reinhardtii
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	1t9i_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1u0d_A interface=21,23,25,27,29,31,32,37,43,45,65,67,69,72,138,139, ntkynkefllylagfvdgdgSiIaQiKpNqSHkfkhQlsltfQvTektqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld > 1u0d_B interface=23,25,27,29,31,32,37,43,45,65,67,69,72,139, ntkynkefllylagfvdgdgsiIaQiKpNqSHkfkhQlsltfQvTektqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndskTrkttsetvravld
interface signature	SIQKNSHQQTYRRVKT/IQKNSHQQTYRRVT

Estimated binding specificities ?

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# IC=21.258 IC/col=1.012 n_of_columns=21

specificity:

A |   0   3  96  85   0   3   0   0   0   3  81  24   8   0  96   0   7  24   0   0   0
C |   0   7   0   3  96   0   0   0  96   5   3  24  78   0   0  96   5  24   0  96   0
G |  96  62   0   3   0   1  96   7   0   7   9  24   7  96   0   0   3  24   0   0  96
T |   0  24   0   5   0  92   0  89   0  81   3  24   3   0   0   0  81  24  96   0   0

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updated Wed Jun 24 11:45:43 2026