1u0d_AB : 3D-footprint complex

structure name	Y33H MUTANT OF HOMING ENDONUCLEASE I-CREI
reference	Stoddard et al. J.Mol.Biol. 342 31 2004
source	Chlamydomonas reinhardtii
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	1t9i_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1u0d_A interface=21,23,25,27,29,31,32,37,43,45,65,67,69,72,138,139, ntkynkefllylagfvdgdgSiIaQiKpNqSHkfkhQlsltfQvTektqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravld > 1u0d_B interface=23,25,27,29,31,32,37,43,45,65,67,69,72,139, ntkynkefllylagfvdgdgsiIaQiKpNqSHkfkhQlsltfQvTektqrrwfldklvdeigvgYvRdRgsVsdyilseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndskTrkttsetvravld
interface signature	SIQKNSHQQTYRRVKT/IQKNSHQQTYRRVT

Estimated binding specificities ?

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# IC=20.226 IC/col=0.963 n_of_columns=21

specificity:

A |   0   0  93  24   0   0   0   0   7  24   7  79   0  86   0  78   0  24   0  14   0
C |  96   0   0  24  88   0   0  96   3  24   7   3   0   7  96   0   0  24   0  75  96
G |   0  96   3  24   3  96   0   0  79  24   3   7  96   0   0   0  96  24   0   7   0
T |   0   0   0  24   5   0  96   0   7  24  79   7   0   3   0  18   0  24  96   0   0

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updated Tue Jul 29 16:54:05 2025