interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF UP1 COMPLEXED WITH D(TTAGGGTTA(DI)GG); A HUMAN TELOMERIC REPEAT CONTAINING INOSINE
(Heterogeneous nuclear ribonucleoprotein A1)
referenceMyers et al. J.Mol.Biol. 342 743 2004
sourceHomo sapiens
experimentX-ray (resolution=1.80, R-factor=0.207)
structural superfamilyRNA-binding domain, RBD;
sequence familyRNA recognition motif aka RRM, RBD, or;
redundant complexes1u1o_A 2up1_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureEQKFDVMFREKAVRESH

Estimated binding specificities ?

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# IC=6.969 IC/col=0.996 n_of_columns=7 specificity:   
A |   0  96   0   0  24   0  12
C |   0   0   0   0  24   0  12
G |   0   0  96  96  24   0  12
T |  96   0   0   0  24  96  60
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updated Tue Dec 19 06:10:03 2023