1u35_G : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYSTAL STRUCTURE OF THE NUCLEOSOME CORE PARTICLE CONTAINING THE HISTONE DOMAIN OF MACROH2A
reference	Chakravarthy et al. Mol.Cell.Biol. 25 7616 2005
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	1u35_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1u35_G interface=1,29, KtsrsakagvifpvgrmlryikkghpkyRigvgapvymaavleyltaeilelavnaardnkkgrvtprhillavandeelnqllkgvtiasggvlpnihpellakk

  
  --RT----                                +8smw_G    
                           +--------------1 
  --RG----                 !              +8ox0_C    
                           !  
  --RT----              +-12                +8u14_G    
                        !  !              +-2 
  --RA----              !  !   +----------6 +1zla_C    
                        !  !   !          ! 
  --RA--RA       +-----14  +--11          +6a5l_g    
                 !      !      !  
  --RG----       !      !      +----------8jla_C    
                 !      !  
  --RG----       !      !                +8txv_G    
                 !      +----------------3 
  --RG----       !                       +5x0y_G    
               -15  
  --RG--RG       !               +-------8kcb_A    
                 !        +-----10  
  LARG----       !        !      !       +7unc_a    
                 !        !      +-------7 
  LCRT----       !        !              +8hr1_E    
                 +-------13  
  --RC----                !          +---6qld_f    
                          !       +--8 
  ----RA--                !       !  +---6g0l_D    
                          +-------9 
  --RA----                        !        +7xsx_a    
                                  !      +-4 
  LC------                        +------5 +8bvw_e    
                                         ! 
  --RT----                               +8grq_A

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updated Tue Dec 17 22:25:15 2024