Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF THE NUCLEOSOME CORE PARTICLE CONTAINING THE HISTONE DOMAIN OF MACROH2A
referenceChakravarthy et al. Mol.Cell.Biol. 25 7616 2005
experimentX-ray (resolution=3.00, R-factor=?)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes1u35_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --------RG--          +-----------------------------8upf_G    
                        !  
  --------RT--          !                            +8u14_G    
                        !             +--------------4 
  --------RC--          !             !              +7yqk_C    
                     +-12     +-------9 
  --------RG--       !  !     !       !              +8txv_G    
                     !  !     !       +--------------5 
  --------RARA       !  !     !                      ! +6a5l_g    
                     !  !     !                      +-3 
  ----HGRTRG--       !  !     !                        +8rbx_V    
                     !  +----11  
  --------RGRG       !        !                  +------8kcb_A    
                     !        !  +---------------6 
  --------RA--       !        !  !               +------7e9c_F    
                   -13        !  !  
  --------RA--       !        !  !                        +7xsx_a    
                     !        +-10         +--------------1 
  --------RC--       !           !         !              +7ux9_E    
                     !           !       +-7 
  --LA----RG--       !           !       ! !              +7unc_a    
                     !           +-------8 +--------------2 
  --------RT--       !                   !                +6px1_A    
                     !                   ! 
  --LC--------       !                   +--------------8bvw_e    
                     !  
  RG----------       +-----------------------------7ccr_H    
                   

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updated Sat Jan 10 04:58:24 2026