3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

home
updated Sun Jan 4 23:44:17 2026

structure name	CRYSTAL STRUCTURE OF THE NUCLEOSOME CORE PARTICLE CONTAINING THE HISTONE DOMAIN OF MACROH2A
reference	Chakravarthy et al. Mol.Cell.Biol. 25 7616 2005
source	HOMO SAPIENS / MUS MUSCULUS
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	Histone-fold;lambda repressor-like DNA-binding domains;p53-like transcription factors;
reference complex	1u35_G 5gtc_H 5o9g_E 5o9g_F 5z3u_A 6a5l_d 6a5l_e 6ir9_e 6iro_A 6nqa_A 6pww_K 6r25_E 6r8y_H 6x0n_f 6yov_C 7at8_D 7d1z_H 7ea8_A 7eg6_A 7egp_S 7nkx_a 7nkx_f 7otq_E 7scy_H 7u0g_M 7unc_a 7und_e 7vdt_B 7xsx_a 7xzx_N 7zs9_e 8aag_A 8atf_Q 8bvw_e 8ceo_r 8cww_A 8g57_E 8h0v_h 8he5_a 8jh2_e 8jhf_A 8siy_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1u35_A interface=2,3,28,46, pHRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaceaylvglfedtnlcaihakrvtimpkdiqlarrirgera > 1u35_B interface=22, dniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 1u35_C interface=1,29, KtsrsakagvifpvgrmlryikkghpkyRigvgapvymaavleyltaeilelavnaardnkkgrvtprhillavandeelnqllkgvtiasggvlpnihpellakk > 1u35_D interface= RkesysiyvykvlkqvhpdtgisskamgImnsfvndiferiaseasrlahynkrstitsrevqtavrlllpgelakhavsegtkavtkytssk > 1u35_E interface=2,3,4,28,46, pHRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfktdlRfqssavmalqeaceaylvglfedtnlcaihakrvtimpkdiqlarrirgera > 1u35_F interface= kVLRdniqgitkpairrlarrggvkriSgliyeetrgvlkvflenVirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 1u35_G interface=1,29, KtsrsakagvifpvgrmlryikkghpkyRigvgapvymaavleyltaeilelavnaardnkkgrvtprhillavandeelnqllkgvtiasggvlpnihpellakk > 1u35_H interface=4,10, krgRkesysIyvykvlkqvhpdtgisskamgimnsfvndiferiaseasrlahynkrstitsrevqtavrlllpgelakhavsegtkavtkytssk