1vrr_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE RESTRICTION ENDONUCLEASE BSTYI COMPLEX WITH DNA
reference	Samuelson et al. Structure 13 791 2005
source	GEOBACILLUS STEAROTHERMOPHILUS
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	Restriction endonuclease-like;
reference complex	2p0j_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1vrr_A interface=46,48,77,115,133,134,136,172,174, mrivevyshlngleyiqvhlphiweeiqeiivsidaeacrtkeskEkTkqgqilyspvalneafkekleakgwkesRtnyyvtadpkliretlslepeeqkkvieaagkealksYnqtdfvkdrvaievqfgKYsFvaydlfvkhmafyvsdkidvgveilpmkelskemsSgIsyyegelynvirqgrgvpavplvligiap > 1vrr_B interface=46,48,115,133,134,136,172,174, mrivevyshlngleyiqvhlphiweeiqeiivsidaeacrtkeskEkTkqgqilyspvalneafkekleakgwkesrtnyyvtadpkliretlslepeeqkkvieaagkealksYnqtdfvkdrvaievqfgKYsFvaydlfvkhmafyvsdkidvgveilpmkelskemsSgIsyyegelynvirqgrgvpavplvligiap
interface signature	ETRYKYFSI/ETYKYFSI

Estimated binding specificities ?

readout + contact

# IC=10.314 IC/col=1.031 n_of_columns=10

specificity:

A |  75   6  96   0  89   0   0   0  78   6
C |   9   6   0   0   0   0  96   0   6   9
G |   6   6   0  96   1   0   0   0   6   6
T |   6  78   0   0   6  96   0  96   6  75

scan!

home
updated Mon Sep 9 14:25:40 2024