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legend  pdf

structure name1.9 A RESOLUTION REFINED STRUCTURE OF TBP RECOGNIZING THE MINOR GROOVE OF TATAAAAG
(TATA BINDING PROTEIN)
referenceBurley et al. Nat.Struct.Biol. 1 638 1994
sourceARABIDOPSIS THALIANA
experimentX-ray (resolution=1.90, R-factor=0.194)
structural superfamilyTATA-box binding protein-like;
sequence familyTranscription factor TFIID or TATAbinding;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureNVFLFVTNVFPLFVT

Estimated binding specificities ?

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# IC=8.659 IC/col=1.082 n_of_columns=8 specificity:   
A |   0   0  15   0   0  96   0  96
C |  68   0  27   0   0   0   0   0
G |  15   0  13   0   0   0   0   0
T |  13  96  41  96  96   0  96   0
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updated Mon Dec 16 19:00:55 2024