1w0t_AB : 3D-footprint complex

structure name	HTRF1 DNA-BINDING DOMAIN IN COMPLEX WITH TELOMERIC DNA.
reference	Chapman et al. 'Embo 6 39 2005
source	HOMO SAPIENS
experiment	X-ray (resolution=2.00, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1w0t_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1w0t_A interface=2,39,40,43,44,47, kRqawlweedknlrsgvrkygegnwskillhykfnnrtSVmlKDrwRtmkkl > 1w0t_B interface=2,39,40,43,44,47, kRqawlweedknlrsgvrkygegnwskillhykfnnrtSVmlKDrwRtmkkl
interface signature	RSVKDR/RSVKDR

Estimated binding specificities ?

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# IC=12.286 IC/col=1.024 n_of_columns=12

specificity:

A |  87  74   3   0   0   3  85   3   0   0   0   3
C |   3  16  90  96  96  16   3   3  96  96  96  14
G |   3   3   3   0   0   3   5   5   0   0   0  10
T |   3   3   0   0   0  74   3  85   0   0   0  69

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updated Fri Dec 13 11:26:37 2024