1w0t_AB : 3D-footprint complex

structure name	HTRF1 DNA-BINDING DOMAIN IN COMPLEX WITH TELOMERIC DNA.
reference	Chapman et al. 'Embo 6 39 2005
source	HOMO SAPIENS
experiment	X-ray (resolution=2.00, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1w0t_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1w0t_A interface=2,39,40,43,44,47, kRqawlweedknlrsgvrkygegnwskillhykfnnrtSVmlKDrwRtmkkl > 1w0t_B interface=2,39,40,43,44,47, kRqawlweedknlrsgvrkygegnwskillhykfnnrtSVmlKDrwRtmkkl
interface signature	RSVKDR/RSVKDR

Estimated binding specificities ?

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# IC=12.336 IC/col=1.028 n_of_columns=12

specificity:

A |  82   0   0   0  73   9  69   0   0   0   4   0
C |   4   0   0   0  15   1   9   0   0   4   4   0
G |   4  96  96  96   4   4   9  96  96  86  11   0
T |   6   0   0   0   4  82   9   0   0   6  77  96

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updated Tue Jul 29 17:00:59 2025