1w0u_AB : 3D-footprint complex

structure name	HTRF2 DNA-BINDING DOMAIN IN COMPLEX WITH TELOMERIC DNA.
reference	Chapman et al. 'Embo 6 39 2005
source	HOMO SAPIENS
experiment	X-ray (resolution=1.80, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1vfc_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1w0u_A interface=2,40,43,44,47,48, kKqkwtveesewvkagvqkygegnwaaisknypfvnrtaVmiKDrwRTmkrlgmn > 1w0u_B interface=2,40,43,44,47, kKqkwtveesewvkagvqkygegnwaaisknypfvnrtaVmiKDrwRtmkrlgmn
interface signature	KVKDRT/KVKDR

Estimated binding specificities ?

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# IC=14.091 IC/col=1.084 n_of_columns=13

specificity:

A |  76   6   0   0   0   6  96   6   0   0   0   8  96
C |   6   6  96  96  96   1   0   6  96  96  96   6   0
G |   6   8   0   0   0   6   0   6   0   0   0   6   0
T |   8  76   0   0   0  83   0  78   0   0   0  76   0

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updated Mon Sep 9 14:26:05 2024