1vfc_A : 3D-footprint complex

structure name	SOLUTION STRUCTURE OF THE DNA COMPLEX OF HUMAN TRF2 (TELOMERIC REPEAT BINDING FACTOR 2)
source	HOMO SAPIENS
experiment	NMR
structural superfamily	Homeodomain-like;
sequence family	Myblike DNAbinding domain;
multimeric complexes	1w0u_AB 3sjm_AB
redundant complexes	1w0u_A 3sjm_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1vfc_A interface=10,47,48,51,52,55, edsttnitkKqkwtveesewvkagvqkygegnwaaisknypfvnrtAVmiKDrwRtmkrlgmn
interface signature	KAVKDR

Estimated binding specificities ?

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# IC=4.022 IC/col=0.575 n_of_columns=7

specificity:

A |  50  15   0   6  24   5  55
C |  16  11   0   0  24   5  26
G |  20  50  96  90  24   1   5
T |  10  20   0   0  24  85  10

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RA----------------KGSAQA--   L       +-----------------------------6j5b_C    
                                     +-1 
  ----------SGVTSCSGNTRTRT--   L   +-2 +-----------------------------6pax_A    
                                   ! ! 
  --LAHAKARA----------------     --3 +-----------------------------6dta_A    
                                   ! 
  RT------------------IAKGNA   L   +-----------------------------2hdd_A

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updated Tue Dec 19 06:13:31 2023