1vfc_A : 3D-footprint complex

structure name	SOLUTION STRUCTURE OF THE DNA COMPLEX OF HUMAN TRF2 (TELOMERIC REPEAT BINDING FACTOR 2)
source	HOMO SAPIENS
experiment	NMR
structural superfamily	Homeodomain-like;
sequence family	Myblike DNAbinding domain;
multimeric complexes	1w0u_AB 3sjm_AB
redundant complexes	1w0u_A 3sjm_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1vfc_A interface=10,47,48,51,52,55, edsttnitkKqkwtveesewvkagvqkygegnwaaisknypfvnrtAVmiKDrwRtmkrlgmn
interface signature	KAVKDR

Estimated binding specificities ?

contact

# IC=4.069 IC/col=0.581 n_of_columns=7

specificity:

A |  11  84  24   3   0  18  14
C |   0   6  24  84  96  51  16
G |  15   3  24   3   0  11  11
T |  70   3  24   6   0  16  55

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RA----------------KGSAQA--   L       +-----------------------------6j5b_C    
                                     +-1 
  ----------SGVTSCSGNTRTRT--   L   +-2 +-----------------------------6pax_A    
                                   ! ! 
  --LAHAKARA----------------     --3 +-----------------------------6dta_A    
                                   ! 
  RT------------------IAKGNA   L   +-----------------------------2hdd_A

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updated Fri Sep 13 16:06:09 2024