1ynw_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF VITAMIN D RECEPTOR AND 9-CIS RETINOIC ACID RECEPTOR DNA-BINDING DOMAINS BOUND TO A DR3 RESPONSE ELEMENT
reference	Shaffer et al. 'J.Steroid 89-90 215 2004
source	HOMO SAPIENS
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	1kb2_B 6fbq_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1ynw_A interface=25,28,32,33, rnvpricgvcgdratgfhfnamtcEgcKgffRRsmkrkalftcaangdcritkdnrracqacrlkrcvdigmmkefiltdeevqrkremilkrkee > 1ynw_B interface=20,23,27,28, icaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavq
interface signature	EKRR/EKKR

Estimated binding specificities ?

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# IC=8.521 IC/col=0.609 n_of_columns=14

specificity:

A |   7   0  62   0  11  24  24  24  24   5   0  24   0   0
C |   5   0   5  96  67  24  24  24  24  16   0  24  96  96
G |   5  96  11   0   7  24  24  24  24  16  96  24   0   0
T |  79   0  18   0  11  24  24  24  24  59   0  24   0   0

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updated Mon Jan 5 00:06:25 2026