1ynw_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF VITAMIN D RECEPTOR AND 9-CIS RETINOIC ACID RECEPTOR DNA-BINDING DOMAINS BOUND TO A DR3 RESPONSE ELEMENT
reference	Shaffer et al. 'J.Steroid 89-90 215 2004
source	HOMO SAPIENS
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	1kb2_B 6fbq_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1ynw_A interface=25,28,32,33, rnvpricgvcgdratgfhfnamtcEgcKgffRRsmkrkalftcaangdcritkdnrracqacrlkrcvdigmmkefiltdeevqrkremilkrkee > 1ynw_B interface=20,23,27,28, icaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavq
interface signature	EKRR/EKKR

Estimated binding specificities ?

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# IC=8.303 IC/col=0.593 n_of_columns=14

specificity:

A |   0   0  24   0  54  24  24  24  24   6   0  12   0  78
C |   0   0  24  96  12  24  24  24  24  12   0  12  96   6
G |  96  96  24   0  12  24  24  24  24  66  96  12   0   6
T |   0   0  24   0  18  24  24  24  24  12   0  60   0   6

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updated Tue Jul 29 17:13:48 2025