interface graph thumbnail
legend  pdf

structure nameTHE GCN4 BASIC REGION LEUCINE ZIPPER BINDS DNA AS A DIMER OF UNINTERRUPTED ALPHA HELICES: CRYSTAL STRUCTURE OF THE PROTEIN-DNA COMPLEX
(PROTEIN GCN4)
referenceEllenberger et al.
sourceSACCHAROMYCES CEREVISIAE
experimentX-ray (resolution=2.90, R-factor=0.230)
structural superfamilyLeucine zipper domain;
sequence familybZIP transcription factor; Basic region leucine zipper;
multimeric complexes1ysa_CD
reference complex2dgc_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKNTAAR

Estimated binding specificities ?

readout + contactlogo
# IC=3.800 IC/col=0.633 n_of_columns=6 specificity:   
A |  84   6   0  76  24  12
C |   6   6   0   8  24   6
G |   6   8  96   6  24  21
T |   0  76   0   6  24  57
scan!

home
updated Thu Sep 12 15:43:50 2024