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structure nameSOLUTION NMR STRUCTURE OF THE GAGA FACTOR/DNA COMPLEX, REGULARIZED MEAN STRUCTURE
(GAGA-FACTOR)
sourceDROSOPHILA MELANOGASTER
experimentNMR
structural superfamilybeta-beta-alpha zinc fingers;
sequence familyGAGA factor;
redundant complexes1yuj
reference complex1yuj_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRKRSQRNR

Estimated binding specificities ?

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# IC=4.880 IC/col=0.813 n_of_columns=6 specificity:   
A |   1  12   3   4   0  19
C |  90  12  87   0  95  17
G |   4  12   3   0   0  44
T |   1  60   3  92   1  16
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Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: GAGA
GAGAGPubMed1yui_A(1.20e-07), 1yuj_A(1.29e-07)
GAGAGGGAGGAGPubMed1yui_A(1.61e-04), 1yuj_A(1.69e-04)
GAGAGAGPubMed1yui_A(6.29e-06), 1yuj_A(6.68e-06)
GAGNGAGPubMed1yui_A(3.37e-03), 1yuj_A(3.52e-03)
CCGAGAGGPubMed1yui_A(1.76e-05), 1yuj_A(1.87e-05)
TGTCTCPubMed1yui_A(1.12e-03), 1yuj_A(1.17e-03)
CGAGACPubMed1yui_A(1.12e-03), 1yuj_A(1.17e-03)
CCCTCPubMed1yui_A(2.62e-03), 1yuj_A(2.74e-03)

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updated Sat Aug 2 02:10:04 2025