structure name | SOLUTION NMR STRUCTURE OF THE GAGA FACTOR/DNA COMPLEX, REGULARIZED MEAN STRUCTURE (GAGA-FACTOR) |
source | DROSOPHILA MELANOGASTER |
experiment | NMR |
structural superfamily | beta-beta-alpha zinc fingers; |
sequence family | GAGA factor; |
redundant complexes | 1yuj |
reference complex | 1yuj_A |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | RKRSQRNR |
Estimated binding specificities ?
readout + contact |
A | 16 0 90 3 60 1 C | 44 0 0 1 12 2 G | 18 96 2 88 12 91 T | 18 0 4 4 12 2scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: GAGA | ||
GAGAG | PubMed | 1yui_A(1.20e-07), 1yuj_A(1.29e-07) |
GAGAGGGAGGAG | PubMed | 1yui_A(1.61e-04), 1yuj_A(1.69e-04) |
GAGAGAG | PubMed | 1yui_A(6.29e-06), 1yuj_A(6.68e-06) |
GAGNGAG | PubMed | 1yui_A(3.37e-03), 1yuj_A(3.52e-03) |
CCGAGAGG | PubMed | 1yui_A(1.76e-05), 1yuj_A(1.87e-05) |
TGTCTC | PubMed | 1yui_A(1.12e-03), 1yuj_A(1.17e-03) |
CGAGAC | PubMed | 1yui_A(1.12e-03), 1yuj_A(1.17e-03) |
CCCTC | PubMed | 1yui_A(2.62e-03), 1yuj_A(2.74e-03) |
home
updated Thu Sep 12 15:44:03 2024