structure name | SOLUTION NMR STRUCTURE OF THE GAGA FACTOR/DNA COMPLEX, 50 STRUCTURES (GAGA-FACTOR) |
source | DROSOPHILA MELANOGASTER |
experiment | NMR |
structural superfamily | C2H2 and C2HC zinc fingers; |
sequence family | GAGA factor; |
redundant complexes | 1yui_A |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | RKRSEQRNR |
Estimated binding specificities ?
readout + contact |
A | 7 12 2 2 1 45 C | 73 12 75 0 93 7 G | 9 12 14 0 1 36 T | 7 60 5 94 1 8scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: GAGA | ||
GAGAG | PubMed | 1yuj_A(1.25e-07), 1yui_A(1.20e-07) |
GAGAGAG | PubMed | 1yuj_A(6.51e-06), 1yui_A(6.32e-06) |
GAGNGAG | PubMed | 1yuj_A(3.46e-03), 1yui_A(3.38e-03) |
GAGAGGGAGGAG | PubMed | 1yuj_A(1.66e-04), 1yui_A(1.62e-04) |
CCGAGAGG | PubMed | 1yuj_A(1.82e-05), 1yui_A(1.77e-05) |
TGTCTC | PubMed | 1yuj_A(1.15e-03), 1yui_A(1.12e-03) |
CGAGAC | PubMed | 1yuj_A(1.15e-03), 1yui_A(1.12e-03) |
CCCTC | PubMed | 1yuj_A(2.69e-03), 1yui_A(2.63e-03) |
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updated Fri Sep 13 16:08:38 2024