1z9c_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF OHRR BOUND TO THE OHRA PROMOTER: STRUCTURE OF MARR FAMILY PROTEIN WITH OPERATOR DNA
reference	Fuangthong et al. Mol.Cell 20 131 2005
source	Bacillus subtilis
experiment	X-ray (resolution=2.64, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	1z9c_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1z9c_A interface=59,60,62,64,69,86, klenqlsfllyassremtkqykplldklnitypqylallllwehetltvkkmgeqlylDSgTlTpmlkRmeqqglitrkrseedeRsvlisltedgallkekavdipgtilglskqsgedlkqlksalytlletlhq > 1z9c_B interface=61,63,65,70,87, mklenqlsfllyassremtkqykplldklnitypqylallllwehetltvkkmgeqlyldSgTlTpmlkRmeqqglitrkrseedeRsvlisltedgallkekavdipgtilglskqsgedlkqlksalytlletlh
interface signature	DSTTRR/STTRR

Estimated binding specificities ?

readout + contact

# IC=15.973 IC/col=0.799 n_of_columns=20

specificity:

A |   0   0  24  79  96   2  24  11   5  82  24  87   5  24  90   0   2  24  96  96
C |   0   0  24   2   0   2  24  10   2   2  24   2  87  24   2   0   2  24   0   0
G |   0   0  24  10   0   0  24  65   2   2  24   5   2  24   2   3   2  24   0   0
T |  96  96  24   5   0  92  24  10  87  10  24   2   2  24   2  93  90  24   0   0

scan!

home
updated Fri Dec 13 11:39:45 2024