1z9c_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF OHRR BOUND TO THE OHRA PROMOTER: STRUCTURE OF MARR FAMILY PROTEIN WITH OPERATOR DNA
reference	Fuangthong et al. Mol.Cell 20 131 2005
source	Bacillus subtilis
experiment	X-ray (resolution=2.64, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	1z9c_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1z9c_A interface=59,60,62,64,69,86, klenqlsfllyassremtkqykplldklnitypqylallllwehetltvkkmgeqlylDSgTlTpmlkRmeqqglitrkrseedeRsvlisltedgallkekavdipgtilglskqsgedlkqlksalytlletlhq > 1z9c_B interface=61,63,65,70,87, mklenqlsfllyassremtkqykplldklnitypqylallllwehetltvkkmgeqlyldSgTlTpmlkRmeqqglitrkrseedeRsvlisltedgallkekavdipgtilglskqsgedlkqlksalytlletlh
interface signature	DSTTRR/STTRR

Estimated binding specificities ?

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# IC=15.995 IC/col=0.800 n_of_columns=20

specificity:

A |   0   0  24  79  96   5  24  15   0  79  24  87   2  24  87   0   2  24  96  96
C |   0   0  24   2   0   2  24  10   1   2  24   2  87  24   2   0   2  24   0   0
G |   0   0  24  13   0   2  24  63   2   2  24   5   2  24   2   0   2  24   0   0
T |  96  96  24   2   0  87  24   8  93  13  24   2   5  24   5  96  90  24   0   0

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updated Mon Sep 9 14:38:36 2024