| structure name | CRYSTAL STRUCTURE OF OHRR BOUND TO THE OHRA PROMOTER: STRUCTURE OF MARR FAMILY PROTEIN WITH OPERATOR DNA (Organic hydroperoxide resistance transcriptional regulator) |
| reference | Fuangthong et al. Mol.Cell 20 131 2005 |
| source | Bacillus subtilis |
| experiment | X-ray (resolution=2.64, R-factor=0.216) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | MarR family; |
| multimeric complexes | 1z9c_AB 1z9c_CD 1z9c_EF |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | DSTTRR |
Estimated binding specificities ?
readout + contact |  |
A | 65 10 24 80 0 5 24 96 96 C | 5 50 24 5 0 5 24 0 0 G | 6 16 24 5 0 5 24 0 0 T | 20 20 24 6 96 81 24 0 0scan! |
Dendrogram of similar interfaces ?
matrix format------DCSA--TA--TT--------RT--RA-- L +1z9c_A +--------------2 ------LTRTPTNA--VT------------RT-- L +----4 +6c2s_C ! ! NT----KTPTQGSC--NTKA------------RT +---5 +--------------5bmz_B ! ! --NG--LTKTPTST--TT--------RT--RT-- L ! ! +7el3_B +-6 +-------------------1 ------DCLT--AG--TTRG------RG--RA-- L ! ! +5h3r_A +-8 ! --ET----RGTCTG--STRG----------KT-- L ! ! +-----------------------6q2b_B +-9 ! ------TT--PTTC--STNT----------RT-- L ! ! +------------------------4lln_I ! ! --------SANCTG--TTPT----------RT-- L ! +-------------------------5hlg_E +-10 ------ETQTPTSC--VTRG----------RT-- L ! ! +3q5f_A ! ! +----------------------3 --------RGTCTA----RGNT--------RT-- L +-11 +--7 +4fx4_B ! ! ! ----------------------------KG---- ! ! +-----------------------7o4j_W +-12 ! ------------------------------RT-- ! ! +---------------------------3gfi_A +-13 ! --TC--STKTPTTT--FT------------RT-- ! ! +---------------------------4ass_H +-14 ! --SGQG--YCNC---------------------- ! ! +----------------------------2ve9_C +-15 ! ------------------------YG-------- ! ! +----------------------------2heo_D -16 ! ----------TA--KTVCHT--KG---------- L ! +----------------------------1je8_F ! ------TC--TC--KGTC----ST---------- L +----------------------------7ve5_B |
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updated Tue Dec 19 06:17:16 2023