1z9c_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF OHRR BOUND TO THE OHRA PROMOTER: STRUCTURE OF MARR FAMILY PROTEIN WITH OPERATOR DNA
reference	Fuangthong et al. Mol.Cell 20 131 2005
source	Bacillus subtilis
experiment	X-ray (resolution=2.64, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	1z9c_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1z9c_C interface=61,62,64,66,71,88, hmklenqlsfllyassremtkqykplldklnitypqylallllwehetltvkkmgeqlylDSgTlTpmlkRmeqqglitrkrseedeRsvlisltedgallkekavdipgtilglskqsgedlkqlksalytlletlh > 1z9c_D interface=60,61,63,65,66,70,87, mklenqlsfllyassremtkqykplldklnitypqylallllwehetltvkkmgeqlylDSgTlTPmlkRmeqqglitrkrseedeRsvlisltedgallkekavdipgtilglskqsgedlkqlksalytlletlh
interface signature	DSTTRR/DSTTPRR

Estimated binding specificities ?

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# IC=11.282 IC/col=0.594 n_of_columns=19

specificity:

A |   0  24  24  92  24  92  24  96  67  24  11  24  46  74   0   5  24  92  92
C |   1  24  24   0  24   4  24   0   7  24   2  24   3  10   0  36  24   2   3
G |   0  24  24   4  24   0  24   0  17  24   1  24  46  11   0  13  24   1   1
T |  95  24  24   0  24   0  24   0   5  24  82  24   1   1  96  42  24   1   0

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updated Mon Sep 9 14:38:50 2024