1z9c_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF OHRR BOUND TO THE OHRA PROMOTER: STRUCTURE OF MARR FAMILY PROTEIN WITH OPERATOR DNA
reference	Fuangthong et al. Mol.Cell 20 131 2005
source	Bacillus subtilis
experiment	X-ray (resolution=2.64, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	1z9c_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1z9c_C interface=61,62,64,66,71,88, hmklenqlsfllyassremtkqykplldklnitypqylallllwehetltvkkmgeqlylDSgTlTpmlkRmeqqglitrkrseedeRsvlisltedgallkekavdipgtilglskqsgedlkqlksalytlletlh > 1z9c_D interface=60,61,63,65,66,70,87, mklenqlsfllyassremtkqykplldklnitypqylallllwehetltvkkmgeqlylDSgTlTPmlkRmeqqglitrkrseedeRsvlisltedgallkekavdipgtilglskqsgedlkqlksalytlletlh
interface signature	DSTTRR/DSTTPRR

Estimated binding specificities ?

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# IC=9.690 IC/col=0.538 n_of_columns=18

specificity:

A |   0  24  24  88  24  96  24  94  55  24   9  24  28  65   0   1  24  96
C |   6  24  24   0  24   0  24   0   9  24   1  24   5   9   0  23  24   0
G |   0  24  24   8  24   0  24   0  23  24   0  24  55  13   0  26  24   0
T |  90  24  24   0  24   0  24   2   9  24  86  24   8   9  96  46  24   0

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updated Wed Jun 24 12:08:58 2026