1z9c_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF OHRR BOUND TO THE OHRA PROMOTER: STRUCTURE OF MARR FAMILY PROTEIN WITH OPERATOR DNA
reference	Fuangthong et al. Mol.Cell 20 131 2005
source	Bacillus subtilis
experiment	X-ray (resolution=2.64, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	1z9c_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1z9c_C interface=61,62,64,66,71,88, hmklenqlsfllyassremtkqykplldklnitypqylallllwehetltvkkmgeqlylDSgTlTpmlkRmeqqglitrkrseedeRsvlisltedgallkekavdipgtilglskqsgedlkqlksalytlletlh > 1z9c_D interface=60,61,63,65,66,70,87, mklenqlsfllyassremtkqykplldklnitypqylallllwehetltvkkmgeqlylDSgTlTPmlkRmeqqglitrkrseedeRsvlisltedgallkekavdipgtilglskqsgedlkqlksalytlletlh
interface signature	DSTTRR/DSTTPRR

Estimated binding specificities ?

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# IC=8.876 IC/col=0.493 n_of_columns=18

specificity:

A |   4  24  74  92   3  24  24  77  24  12   3  24   3  24   0  24  24  92
C |   3  24   9   0  12  24  24   4  24  11   0  24   0  24   3  24  24   0
G |   3  24   6   4  10  24  24   3  24  12   0  24   3  24   0  24  24   1
T |  86  24   7   0  71  24  24  12  24  61  93  24  90  24  93  24  24   3

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updated Tue Jul 29 17:14:52 2025