1z9c_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF OHRR BOUND TO THE OHRA PROMOTER: STRUCTURE OF MARR FAMILY PROTEIN WITH OPERATOR DNA
reference	Fuangthong et al. Mol.Cell 20 131 2005
source	Bacillus subtilis
experiment	X-ray (resolution=2.64, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	1z9c_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1z9c_E interface=60,61,63,65,70,87, mklenqlsfllyassremtkqykplldklnitypqylallllwehetltvkkmgeqlylDSgTlTpmlkRmeqqglitrkrseedeRsvlisltedgallkekavdipgtilglskqsgedlkqlksalytlletlh > 1z9c_F interface=61,62,64,66,71,88, hmklenqlsfllyassremtkqykplldklnitypqylallllwehetltvkkmgeqlylDSgTlTpmlkRmeqqglitrkrseedeRsvlisltedgallkekavdipgtilglskqsgedlkqlksalytlletlh
interface signature	DSTTRR/DSTTRR

Estimated binding specificities ?

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# IC=10.188 IC/col=0.509 n_of_columns=20

specificity:

A |   3   3  24  24  92  24  24  24  92  57  24   2  24  46  24   2   5  24  96  90
C |   3   3  24  24   1  24  24  24   1   9  24   0  24   7  24   3   7  24   0   1
G |   3   0  24  24   1  24  24  24   0  21  24   0  24  36  24   1  10  24   0   4
T |  87  90  24  24   2  24  24  24   3   9  24  94  24   7  24  90  74  24   0   1

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updated Fri Dec 13 11:40:26 2024