1z9c_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF OHRR BOUND TO THE OHRA PROMOTER: STRUCTURE OF MARR FAMILY PROTEIN WITH OPERATOR DNA
reference	Fuangthong et al. Mol.Cell 20 131 2005
source	Bacillus subtilis
experiment	X-ray (resolution=2.64, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	1z9c_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1z9c_E interface=60,61,63,65,70,87, mklenqlsfllyassremtkqykplldklnitypqylallllwehetltvkkmgeqlylDSgTlTpmlkRmeqqglitrkrseedeRsvlisltedgallkekavdipgtilglskqsgedlkqlksalytlletlh > 1z9c_F interface=61,62,64,66,71,88, hmklenqlsfllyassremtkqykplldklnitypqylallllwehetltvkkmgeqlylDSgTlTpmlkRmeqqglitrkrseedeRsvlisltedgallkekavdipgtilglskqsgedlkqlksalytlletlh
interface signature	DSTTRR/DSTTRR

Estimated binding specificities ?

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# IC=10.549 IC/col=0.527 n_of_columns=20

specificity:

A |   1   0  24  61  95  24   9  24  94  24  22   1  24  24  24   2  24  24  96  94
C |   8   0  24   7   0  24  55  24   0  24  19   1  24  24  24   1  24  24   0   0
G |   1   0  24  13   1  24   9  24   0  24   7   0  24  24  24   1  24  24   0   1
T |  86  96  24  15   0  24  23  24   2  24  48  94  24  24  24  92  24  24   0   1

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updated Mon Sep 9 14:39:03 2024