1z9c_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF OHRR BOUND TO THE OHRA PROMOTER: STRUCTURE OF MARR FAMILY PROTEIN WITH OPERATOR DNA
reference	Fuangthong et al. Mol.Cell 20 131 2005
source	Bacillus subtilis
experiment	X-ray (resolution=2.64, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	1z9c_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1z9c_E interface=60,61,63,65,70,87, mklenqlsfllyassremtkqykplldklnitypqylallllwehetltvkkmgeqlylDSgTlTpmlkRmeqqglitrkrseedeRsvlisltedgallkekavdipgtilglskqsgedlkqlksalytlletlh > 1z9c_F interface=61,62,64,66,71,88, hmklenqlsfllyassremtkqykplldklnitypqylallllwehetltvkkmgeqlylDSgTlTpmlkRmeqqglitrkrseedeRsvlisltedgallkekavdipgtilglskqsgedlkqlksalytlletlh
interface signature	DSTTRR/DSTTRR

Estimated binding specificities ?

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# IC=10.375 IC/col=0.519 n_of_columns=20

specificity:

A |   5   0  24  71  92  24   7  24  90  24  11   0  24  24  24   0  24  24  91  92
C |   3   0  24   3   0  24  44  24   1  24  24   0  24  24  24   1  24  24   3   4
G |   3   0  24   7   3  24   3  24   0  24   9   0  24  24  24   3  24  24   1   0
T |  85  96  24  15   1  24  42  24   5  24  52  96  24  24  24  92  24  24   1   0

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updated Tue Jul 29 17:15:07 2025