2ayb_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF HPV6A E2 DNA BINDING DOMAIN BOUND TO A 16 BASE PAIR DNA TARGET
reference	Brady et al. 'Nucleic 34 3897 2006
source	Human papillomavirus type 6a
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	Viral DNA-binding domain;
reference complex	2ayg_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2ayb_A interface=14,17,18,21,22, ssatpivqfqgesNclKCfrYRlndkhrhlfdlisstwhwaspkaphkhaivtvtyhseeqrqqflnvvkipptirhklgfmsmhll > 2ayb_B interface=14,17,18,21,22, ssatpivqfqgesNclKCfrYRlndkhrhlfdlisstwhwaspkaphkhaivtvtyhseeqrqqflnvvkipptirhklgfmsmhll
interface signature	NKCYR/NKCYR

Estimated binding specificities ?

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# IC=12.445 IC/col=0.778 n_of_columns=16

specificity:

A |   5  96  80   0   0   6  24  24  24  24   6   0   0   5   0   5
C |  80   0   5  96  96   5  24  24  24  24  80   0   0   5   0   5
G |   5   0   5   0   0  80  24  24  24  24   5  96  96   5   0  80
T |   6   0   6   0   0   5  24  24  24  24   5   0   0  81  96   6

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updated Fri Dec 13 11:47:22 2024