| structure name | CRYSTAL STRUCTURE OF HPV6A E2 DNA BINDING DOMAIN BOUND TO AN 18 BASE PAIR DNA TARGET (Regulatory protein E2) |
| reference | Brady et al. 'Nucleic 34 3897 2006 |
| source | Human papillomavirus type 6a |
| experiment | X-ray (resolution=3.10, R-factor=0.247) |
| structural superfamily | Viral DNA-binding domain; |
| sequence family | E2 early protein, C terminal; |
| multimeric complexes | 2ayb_AB 2ayg_AB |
| redundant complexes |  2ayb_B
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | NKCYR |
Estimated binding specificities ?
readout + contact |  |
A | 7 0 0 7 7 7 C | 73 0 0 9 7 7 G | 7 96 96 7 9 75 T | 9 0 0 73 73 7scan! |
Dendrogram of similar interfaces ?
matrix format--NCKGCA--YGRA-------------------------- L +----------2ayg_A +------------2 KTTGYCNG--RT---------------------------- L ! ! +1b3t_A +-3 +----------1 KGTAYCNG--RT---------------------------- L ! ! +5t7x_B +-4 ! --------IC----RCKCIC--EC--RC------------ L ! ! +-----------------------1zzi_A --5 ! ------------------------------RC-------- L ! +-------------------------2itl_B ! --------------------VG--MG--FG--RTETKTAG L +--------------------------2up1_A |
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updated Fri Sep 13 16:12:30 2024