2ayg_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF HPV6A E2 DNA BINDING DOMAIN BOUND TO AN 18 BASE PAIR DNA TARGET
reference	Brady et al. 'Nucleic 34 3897 2006
source	Human papillomavirus type 6a
experiment	X-ray (resolution=3.10, R-factor=?)
structural superfamily	Viral DNA-binding domain;
reference complex	2ayg_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2ayg_A interface=14,17,18,21,22, ssatpivqfqgesNclKCfrYRlndkhrhlfdlisstwhwaspkaphkhaivtvtyhseeqrqqflnvvkipptirhklgfmsmhll > 2ayg_B interface=14,17,18,21,22, ssatpivqfqgesNclKCfrYRlndkhrhlfdlisstwhwaspkaphkhaivtvtyhseeqrqqflnvvkipptirhklgfmsmhll
interface signature	NKCYR/NKCYR

Estimated binding specificities ?

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# IC=12.301 IC/col=0.769 n_of_columns=16

specificity:

A |   4  91  83   0   0   4  24  24  24  24   4   0   0   4   4   4
C |  84   4   4  96  96   4  24  24  24  24  83   0   0   5   4   4
G |   4   0   5   0   0  84  24  24  24  24   5  96  96   4   4  83
T |   4   1   4   0   0   4  24  24  24  24   4   0   0  83  84   5

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updated Mon Sep 9 14:45:58 2024