2c6y_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF INTERLEUKIN ENHANCER-BINDING FACTOR 1 BOUND TO DNA
reference	Chuang et al. J.Biol.Chem. 281 17400 2006
source	HOMO SAPIENS
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	2c6y_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2c6y_A interface=49,50,52,53,56,57,73,98, dskppysyaqlivqaitmapdkqltlngiythitknypyyrtadkgwqNSiRHnlSLnryfikvprsqeepgKgsfwridpasesklieqafrkrrpR > 2c6y_B interface=45,49,52,53,56, dskppysyaqlivqaitmapdkqltlngiythitknypyyrtadKgwqNsiRHnlSlnryfikvprsqeepgkgsfwridpasesklieqafrkr
interface signature	NSRHSLKR/KNRHS

Estimated binding specificities ?

readout + contact

# IC=10.659 IC/col=0.969 n_of_columns=11

specificity:

A |   0   0   6  80   0   5  15  10   0   0  85
C |   0   0   0   6   0   0  10  10  10   0   0
G |   0  96   5   5   0   5  61   6   1   0   5
T |  96   0  85   5  96  86  10  70  85  96   6

scan!

home
updated Mon Sep 9 14:48:10 2024