2c6y_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF INTERLEUKIN ENHANCER-BINDING FACTOR 1 BOUND TO DNA
reference	Chuang et al. J.Biol.Chem. 281 17400 2006
source	HOMO SAPIENS
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	2c6y_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2c6y_A interface=49,50,52,53,56,57,73,98, dskppysyaqlivqaitmapdkqltlngiythitknypyyrtadkgwqNSiRHnlSLnryfikvprsqeepgKgsfwridpasesklieqafrkrrpR > 2c6y_B interface=45,49,52,53,56, dskppysyaqlivqaitmapdkqltlngiythitknypyyrtadKgwqNsiRHnlSlnryfikvprsqeepgkgsfwridpasesklieqafrkr
interface signature	NSRHSLKR/KNRHS

Estimated binding specificities ?

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# IC=10.818 IC/col=0.983 n_of_columns=11

specificity:

A |   0   0   6  82   0   4  13   9   1   0  91
C |   0   0   0   4   0   4  10  13   9   0   0
G |   0  96   4   6   0   4  64  10   0   0   0
T |  96   0  86   4  96  84   9  64  86  96   5

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updated Fri Dec 13 11:49:27 2024