2d45_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE MECI-MECA REPRESSOR-OPERATOR COMPLEX
reference	Musayev et al. 'Acta 62 320 2006
source	Staphylococcus aureus
experiment	X-ray (resolution=3.80, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	1sax_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2d45_A interface=39,40,42,43,44,47, tyeissaewevmniiwmkkyasanniieeiqmqkdwspKTiRTLitRlykkgfidrkkdnkifqyyslveesdikyktsknfinkvykggfnslvlnfvekedlsqdeieelrniln > 2d45_B interface=41,42,44,45,46,49, nktyeissaewevmniiwmkkyasanniieeiqmqkdwspKTiRTLitRlykkgfidrkkdnkifqyyslveesdikyktsknfinkvykggfnslvlnfvekedlsqdeieelrniln
interface signature	KTRTLR/KTRTLR

Estimated binding specificities ?

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# IC=12.887 IC/col=0.805 n_of_columns=16

specificity:

A |   5  24  24   1  96   0  90   1  65   5   0   0  89  24   1  96
C |   6  24  24  21   0  96   1   1  11   5   0   0   0  24  36   0
G |   5  24  24   0   0   0   5   6  15   3  96   0   7  24  19   0
T |  80  24  24  74   0   0   0  88   5  83   0  96   0  24  40   0

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updated Mon Sep 9 14:52:55 2024