2d45_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE MECI-MECA REPRESSOR-OPERATOR COMPLEX
reference	Musayev et al. 'Acta 62 320 2006
source	Staphylococcus aureus
experiment	X-ray (resolution=3.80, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	1sax_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2d45_A interface=39,40,42,43,44,47, tyeissaewevmniiwmkkyasanniieeiqmqkdwspKTiRTLitRlykkgfidrkkdnkifqyyslveesdikyktsknfinkvykggfnslvlnfvekedlsqdeieelrniln > 2d45_B interface=41,42,44,45,46,49, nktyeissaewevmniiwmkkyasanniieeiqmqkdwspKTiRTLitRlykkgfidrkkdnkifqyyslveesdikyktsknfinkvykggfnslvlnfvekedlsqdeieelrniln
interface signature	KTRTLR/KTRTLR

Estimated binding specificities ?

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# IC=11.493 IC/col=0.884 n_of_columns=13

specificity:

A |   0  55  24   0  96   0  68   4  88   2   0   0  73
C |   0  27  24  10   0  96   9  20   2   4   0   3   2
G |   0  12  24   0   0   0   7   4   4   4  96   0  19
T |  96   2  24  86   0   0  12  68   2  86   0  93   2

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updated Fri Dec 13 11:54:16 2024