2er8_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF LEU3 DNA-BINDING DOMAIN COMPLEXED WITH A 12MER DNA DUPLEX
reference	Fitzgerald et al. Structure 14 725 2006
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=2.85, R-factor=?)
structural superfamily	Zn2/Cys6 DNA-binding domain;
reference complex	2er8_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2er8_A interface=12,13,48, krkfacvecrqQKskcdaherapepctkcakknvpcilkrdfrrtykRarneaiekrfkeltrtltnl > 2er8_B interface=11,12,43, rkfacvecrqQKskcdaherapepctkcakknvpcilkrdfrRtykrarneaiekrfkeltrtltnl
interface signature	QKR/QKR

Estimated binding specificities ?

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# IC=4.147 IC/col=0.461 n_of_columns=9

specificity:

A |  10   4   2  24  24   4   6   9  16
C |  63   4   2  24  24  81  78  11  16
G |  13  81  88  24  24   4   6  67  48
T |  10   7   4  24  24   7   6   9  16

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updated Fri Dec 13 11:59:26 2024