2er8_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF LEU3 DNA-BINDING DOMAIN COMPLEXED WITH A 12MER DNA DUPLEX
reference	Fitzgerald et al. Structure 14 725 2006
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=2.85, R-factor=?)
structural superfamily	Zn2/Cys6 DNA-binding domain;
reference complex	2er8_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2er8_C interface=11,12,43, rkfacvecrqQKskcdaherapepctkcakknvpcilkrdfrRtykrarneaiekrfkeltrtl > 2er8_D interface=12,13,44,46, krkfacvecrqQKskcdaherapepctkcakknvpcilkrdfrRtYkrarneaiekrfkeltrtltnl
interface signature	QKR/QKRY

Estimated binding specificities ?

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# IC=9.857 IC/col=0.986 n_of_columns=10

specificity:

A |   0   0   0   0  16  64   0   0   0   5
C |  74  96   0   0   5  11  96  96   0  16
G |   5   0  96  96  16   5   0   0  96  65
T |  17   0   0   0  59  16   0   0   0  10

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updated Mon Sep 9 14:57:42 2024