2er8_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF LEU3 DNA-BINDING DOMAIN COMPLEXED WITH A 12MER DNA DUPLEX
reference	Fitzgerald et al. Structure 14 725 2006
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=2.85, R-factor=?)
structural superfamily	Zn2/Cys6 DNA-binding domain;
reference complex	2er8_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2er8_C interface=11,12,43, rkfacvecrqQKskcdaherapepctkcakknvpcilkrdfrRtykrarneaiekrfkeltrtl > 2er8_D interface=12,13,44,46, krkfacvecrqQKskcdaherapepctkcakknvpcilkrdfrRtYkrarneaiekrfkeltrtltnl
interface signature	QKR/QKRY

Estimated binding specificities ?

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# IC=9.567 IC/col=0.957 n_of_columns=10

specificity:

A |   5   0   0   0  13  64   0   0   0   5
C |  56  96   0   0  16  11  96  96   0   5
G |  16   0  96  96  11   5   0   0  96  75
T |  19   0   0   0  56  16   0   0   0  11

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updated Fri Dec 13 11:59:34 2024