interface graph thumbnail
legend  pdf

structure namePRINCIPLES OF PROTEIN-DNA RECOGNITION REVEALED IN THE STRUCTURAL ANALYSIS OF NDT80-MSE DNA COMPLEXES
(NDT80 protein)
referenceLamoureux et al. Structure 14 555 2006
sourceSaccharomyces cerevisiae
experimentX-ray (resolution=1.67, R-factor=0.181)
structural superfamilyp53-like transcription factors;
sequence familyNDT80 / PhoG like DNAbinding family;
reference complex1mnn_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signaturePRRNRDR

Estimated binding specificities ?

readout + contactlogo
# IC=8.694 IC/col=0.869 n_of_columns=10 specificity:   
A |   8  14   0   0   0   0   0   6  24   8
C |   6   6   6   0   0   0   0   6  24   6
G |   6   6   6   0  96   0  96   6  24  76
T |  76  70  84  96   0  96   0  78  24   6
scan!

home
updated Thu Sep 12 16:03:05 2024