interface graph thumbnail
legend  pdf

structure namePRINCIPLES OF PROTEIN-DNA RECOGNITION REVEALED IN THE STRUCTURAL ANALYSIS OF NDT80-MSE DNA COMPLEXES
(NDT80 protein)
referenceLamoureux et al. Structure 14 555 2006
sourceSaccharomyces cerevisiae
experimentX-ray (resolution=1.67, R-factor=0.181)
structural superfamilyp53-like transcription factors;
sequence familyNDT80 / PhoG like DNAbinding family;
reference complex1mnn_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signaturePRRNRDR

Estimated binding specificities ?

contactlogo
# IC=6.518 IC/col=0.815 n_of_columns=8 specificity:   
A |  11  24  67   0  96   0  96  69
C |  57  24   9  96   0  96   0   9
G |   9  24  11   0   0   0   0   9
T |  19  24   9   0   0   0   0   9
scan!

home
updated Thu Jan 8 19:57:29 2026