1mnn_A : 3D-footprint complex

structure name	STRUCTURE OF THE SPORULATION SPECIFIC TRANSCRIPTION FACTOR NDT80 BOUND TO DNA (NDT80 protein)
reference	Lamoureux et al. 'Embo 21 5721 2002
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=1.40, R-factor=0.195)
structural superfamily	p53-like transcription factors;
sequence family	NDT80 / PhoG like DNAbinding family;
redundant complexes	2etw_A 2euv_A 2euw_A 2eux_A 2euz_A 2evf_A 2evg_A 2evh_A 2evi_A 2evj_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1mnn_A interface=25,26,79,80,139,140,281, viltqlnedgttsnyfdkrklkiaPRstlqfkvgppfelvrdycpvveshtgrtldlriipridrgfdhideewvgykRNyftlvstfetancdldtflkssfdllvgrlrvqyfaikikaknddddteinlvqhtakRDkgpqfcpsvcplvpsplpkhqtireasnvrnitkmkkydstfylhrdhvnyeeygvdsllfsypedsiqkvaryervqfassisvkkpsqqnkhfslhvilgavvdpdgipydelalkngskgmfvylqemktppliirgRspsnyassq
interface signature	PRRNRDR

Estimated binding specificities ?

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# IC=8.865 IC/col=0.985 n_of_columns=9

specificity:

A |   7   0  30   0  96   0  96  68  66
C |  73   0  66  96   0  96   0   7   7
G |   9  96   0   0   0   0   0   7  16
T |   7   0   0   0   0   0   0  14   7

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updated Fri Sep 13 15:50:35 2024