interface graph thumbnail
legend  pdf

structure namePRINCIPLES OF PROTEIN-DNA RECOGNITION REVEALED IN THE STRUCTURAL ANALYSIS OF NDT80-MSE DNA COMPLEXES
(NDT80 protein)
referenceLamoureux et al. Structure 14 555 2006
sourceSaccharomyces cerevisiae
experimentX-ray (resolution=1.94, R-factor=0.195)
structural superfamilyp53-like transcription factors;
sequence familyNDT80 / PhoG like DNAbinding family;
reference complex1mnn_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signaturePRRNRDR

Estimated binding specificities ?

contactlogo
# IC=5.894 IC/col=0.982 n_of_columns=6 specificity:   
A |  27  13   0   0   0   0
C |  54  13   0   0   0   0
G |  13  16   0  96   0  96
T |   2  54  96   0  96   0
scan!

home
updated Thu Sep 12 16:03:15 2024