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legend  pdf

structure namePRINCIPLES OF PROTEIN-DNA RECOGNITION REVEALED IN THE STRUCTURAL ANALYSIS OF NDT80-MSE DNA COMPLEXES
(NDT80 protein)
referenceLamoureux et al. Structure 14 555 2006
sourceSaccharomyces cerevisiae
experimentX-ray (resolution=1.94, R-factor=0.195)
structural superfamilyp53-like transcription factors;
sequence familyNDT80 / PhoG like DNAbinding family;
reference complex1mnn_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signaturePRRNRDR

Estimated binding specificities ?

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# IC=2.730 IC/col=0.546 n_of_columns=5 specificity:   
A |  17  12   1  10   5
C |  18  12   1  12   4
G |  16  12  93  14  83
T |  45  60   1  60   4
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updated Thu Jan 8 19:57:43 2026