2euw_A : 3D-footprint complex

structure name	STRUCTURE OF A NDT80-DNA COMPLEX (MSE MUTANT MA4T) (NDT80 protein)
reference	Lamoureux et al. Structure 14 555 2006
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=1.68, R-factor=0.178)
structural superfamily	p53-like transcription factors;
sequence family	NDT80 / PhoG like DNAbinding family;
reference complex	1mnn_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2euw_A interface=25,26,79,139,140,141,281, viltqlnedgttsnyfdkrklkiaPRstlqfkvgppfelvrdycpvveshtgrtldlriipridrgfdhideewvgykRnyftlvstfetancdldtflkssfdllvgrlrvqyfaikikaknddddteinlvqhtakRDKgpqfcpsvcplvpsplpkhqtireasnvrnitkmkkydstfylhrdhvnyeeygvdsllfsypedsiqkvaryervqfassisvkkpsqqnkhfslhvilgavvdpdgipydelalkngskgmfvylqemktppliirgRspsnyassq
interface signature	PRRRDKR

Estimated binding specificities ?

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# IC=8.923 IC/col=0.991 n_of_columns=9

specificity:

A |   7   0   0   0  96   0   7   0   7
C |   7   9   0   0   0   0   8  96   1
G |  14  14   0  96   0  96  22   0  81
T |  68  73  96   0   0   0  59   0   7

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updated Thu Sep 12 16:03:22 2024