2eux_A : 3D-footprint complex

structure name	STRUCTURE OF A NDT80-DNA COMPLEX (MSE VARIANT VA4G) (NDT80 protein)
reference	Lamoureux et al. Structure 14 555 2006
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=1.57, R-factor=0.173)
structural superfamily	p53-like transcription factors;
sequence family	NDT80 / PhoG like DNAbinding family;
reference complex	1mnn_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2eux_A interface=25,26,79,139,140,281, viltqlnedgttsnyfdkrklkiaPRstlqfkvgppfelvrdycpvveshtgrtldlriipridrgfdhideewvgykRnyftlvstfetancdldtflkssfdllvgrlrvqyfaikikaknddddteinlvqhtakRDkgpqfcpsvcplvpsplpkhqtireasnvrnitkmkkydstfylhrdhvnyeeygvdsllfsypedsiqkvaryervqfassisvkkpsqqnkhfslhvilgavvdpdgipydelalkngskgmfvylqemktppliirgRspsnyassq
interface signature	PRRRDR

Estimated binding specificities ?

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# IC=9.337 IC/col=1.037 n_of_columns=9

specificity:

A |   9   9   0   0   0   0   0   0  11
C |   9   9   0   0  96   0   0  96   9
G |   9  11   0  96   0  96   0   0  67
T |  69  67  96   0   0   0  96   0   9

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updated Thu Sep 12 16:03:30 2024