2euz_A : 3D-footprint complex

structure name	STRUCTURE OF A NDT80-DNA COMPLEX (MSE MUTANT MC5T) (NDT80 protein)
reference	Lamoureux et al. Structure 14 555 2006
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=1.56, R-factor=0.176)
structural superfamily	p53-like transcription factors;
sequence family	NDT80 / PhoG like DNAbinding family;
reference complex	1mnn_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2euz_A interface=25,26,79,80,139,140,281, viltqlnedgttsnyfdkrklkiaPRstlqfkvgppfelvrdycpvveshtgrtldlriipridrgfdhideewvgykRNyftlvstfetancdldtflkssfdllvgrlrvqyfaikikaknddddteinlvqhtakRDkgpqfcpsvcplvpsplpkhqtireasnvrnitkmkkydstfylhrdhvnyeeygvdsllfsypedsiqkvaryervqfassisvkkpsqqnkhfslhvilgavvdpdgipydelalkngskgmfvylqemktppliirgRspsnyassq
interface signature	PRRNRDR

Estimated binding specificities ?

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# IC=8.647 IC/col=0.961 n_of_columns=9

specificity:

A |   0   0  96   0  96  12  72  78  78
C |  84   0   0  96   0   6   0   6   6
G |   6  96   0   0   0  12  12   6   6
T |   6   0   0   0   0  66  12   6   6

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updated Thu Sep 12 16:03:38 2024