2evg_A : 3D-footprint complex

structure name	STRUCTURE OF A NDT80-DNA COMPLEX (MSE MUTANT MA7T) (NDT80 protein)
reference	Lamoureux et al. Structure 14 555 2006
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=1.55, R-factor=0.169)
structural superfamily	p53-like transcription factors;
sequence family	NDT80 / PhoG like DNAbinding family;
reference complex	1mnn_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2evg_A interface=25,26,79,80,139,140,281, viltqlnedgttsnyfdkrklkiaPRstlqfkvgppfelvrdycpvveshtgrtldlriipridrgfdhideewvgykRNyftlvstfetancdldtflkssfdllvgrlrvqyfaikikaknddddteinlvqhtakRDkgpqfcpsvcplvpsplpkhqtireasnvrnitkmkkydstfylhrdhvnyeeygvdsllfsypedsiqkvaryervqfassisvkkpsqqnkhfslhvilgavvdpdgipydelalkngskgmfvylqemktppliirgRspsnyassq
interface signature	PRRNRDR

Estimated binding specificities ?

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# IC=8.858 IC/col=0.984 n_of_columns=9

specificity:

A |   6  75   0   0   0   0   6   0  13
C |   0  15   0   0   0   0  16  96   6
G |   6   6   0  96   6  96  13   0  68
T |  84   0  96   0  90   0  61   0   9

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updated Thu Sep 12 16:03:54 2024